{"schemaVersion":"1.0.0","auditedAt":"2026-07-27","registryVersion":"2026.07.27.2","releaseNotes":[{"type":"scientific-correction-laidlaw-strain","affectedRecords":["lai-2026-cruzi"],"summary":"Laidlaw et al. 2026 biological strain corrected to Silvio X10/7 A1; Dm28c 2018 retained only as the mapping reference.","summaryZh":"Laidlaw等（2026）的实验株纠正为Silvio X10/7 A1；Dm28c 2018仅作为比对参考保留。","evidence":"https://www.nature.com/articles/s41467-026-73098-w"},{"type":"scientific-correction-briggs-2021-scope","affectedRecords":["brg-2021-bsf"],"summary":"Briggs et al. 2021 now uses the paper spelling EATRO 1125 AnTa1.1 90:13 and states that 10,894 cells comprise 8,599 WT plus 2,295 ZC3H20-KO cells.","summaryZh":"Briggs等（2021）现采用论文拼写EATRO 1125 AnTa1.1 90:13，并明确10,894个细胞由8,599个野生型与2,295个ZC3H20敲除细胞构成。","evidence":"https://www.nature.com/articles/s41467-021-25607-2"},{"type":"scientific-correction-howick-strain-boundary","affectedRecords":["how-2022-tsetse"],"summary":"Howick et al. 2022 now records the exact J10 and 1738 strain identifiers, treats DP as a FACS sorting group and exposes the stage–strain confounding and VSG-reference limitation.","summaryZh":"Howick等（2022）现记录J10与1738的完整菌株编号，将DP明确为FACS分选组，并公开阶段—菌株混杂及VSG参考偏差限制。","evidence":"https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1010346"},{"type":"scientific-correction-reuter-citation-method","affectedRecords":["reu-2023-skin"],"summary":"Reuter et al. 2023 citation corrected to Nature Communications 14, article 7660; the Methods SMART-Seq v4 wording and Figure 4 Smart-seq2/Nextera wording are both preserved.","summaryZh":"Reuter等（2023）的引文纠正为Nature Communications第14卷、文章7660；同时保留Methods中的SMART-Seq v4与Figure 4图注中的Smart-seq2/Nextera两种来源表述。","evidence":"https://www.nature.com/articles/s41467-023-43437-2"},{"type":"scientific-correction-inchausti-count-source","affectedRecords":["inc-2026-cruzi"],"summary":"Inchausti et al. 2026 catalogue count corrected to 3,151 final singlets after removal of 41 doublets from 3,192 post-QC cells; infected H9c2 experimental source is kept separate from the SRA isolation-source field.","summaryZh":"Inchausti等（2026）的目录细胞数纠正为3,151个最终singlet（3,192个质控后细胞移除41个双细胞）；感染H9c2的实验来源与SRA isolation-source字段分开记录。","evidence":"https://elifesciences.org/articles/105822"},{"type":"metadata","summary":"Added study-level data passports, controlled availability and curation status, expression semantics, coordinate status and explicit licence boundaries.","summaryZh":"新增逐研究数据护照、受控可用性与审核状态、表达语义、坐标状态及明确许可边界。"},{"type":"interoperability","summary":"Added JSON and CSV registry exports, Schema.org Dataset markup, a public JSON Schema, robots.txt and sitemap.xml.","summaryZh":"新增JSON/CSV注册表、Schema.org Dataset标记、公开JSON Schema、robots.txt与sitemap.xml。"}],"policy":{"cadence":"Repository metadata: monthly; primary-paper and author-processed archives: quarterly; new-study discovery: monthly.","publication":"A changed source creates a review item. It never updates public cell totals, labels or expression layers until a scientific reviewer approves the evidence and a versioned release is published.","failure":"An unreachable source is marked for review. Existing verified data remain available with their last successful audit date; no replacement values are generated."},"automation":{"discoveryRegistry":"implemented","onDemandConnectivityChecker":"implemented","machineReadableStatus":"implemented","authenticatedReviewSurface":"implemented","scheduledRunner":"monthly-codex-evidence-audit-active","explanation":"A monthly project-scoped evidence audit checks registered endpoints and searches primary repositories. It reports evidence for human review and is deliberately prohibited from editing scientific data or deploying releases."},"roles":[{"id":"administrator","name":"Administrator","nameZh":"管理员","permissions":["Manage reviewer membership","Approve releases","Publish or retract portal records"]},{"id":"scientific-reviewer","name":"Scientific reviewer","nameZh":"科学审核员","permissions":["Verify paper and repository claims","Approve terminology mappings","Record unresolved discrepancies"]},{"id":"submitter","name":"Data submitter","nameZh":"数据提交者","permissions":["Propose a study","Provide verifiable source links","Respond to reviewer questions"]}],"workflow":["discovered","metadata-verified","scientific-review","approved","published"],"sources":[{"id":"prjeb41744","label":"Briggs et al. 2021","paper":"https://doi.org/10.1038/s41467-021-25607-2","repository":"https://www.ebi.ac.uk/ena/browser/view/PRJEB41744","processed":"https://zenodo.org/records/5163554","lastChecked":"2026-07-27","status":"verified","nextReview":"2026-08-27","publicRecord":"/datasets/prjeb41744/"},{"id":"erp132258","label":"Howick et al. 2022","paper":"https://doi.org/10.1371/journal.ppat.1010346","repository":"https://www.ebi.ac.uk/ena/browser/view/ERP132258","processed":"https://zenodo.org/records/6047732","lastChecked":"2026-07-27","status":"verified-with-boundary","nextReview":"2026-08-27","publicRecord":"/datasets/erp132258/"},{"id":"prjeb58781","label":"Briggs et al. 2023","paper":"https://doi.org/10.7554/eLife.86325","repository":"https://www.ebi.ac.uk/ena/browser/view/PRJEB58781","processed":"https://zenodo.org/records/7508131","lastChecked":"2026-07-27","status":"verified","nextReview":"2026-08-27","publicRecord":"/datasets/prjeb58781/"},{"id":"gse174198","label":"Reuter et al. 2023","paper":"https://doi.org/10.1038/s41467-023-43437-2","repository":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE174198","processed":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE174198","lastChecked":"2026-07-27","status":"verified-with-embedding-boundary","nextReview":"2026-08-27","publicRecord":"/datasets/gse174198/"},{"id":"e-mtab-14406","label":"Laidlaw et al. 2026","paper":"https://doi.org/10.1038/s41467-026-73098-w","repository":"https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-14406","processed":"https://cellatlas-cxg.mvls.gla.ac.uk/view/Trypanosoma_cruzi_inVitro_cellatlas.h5ad/","lastChecked":"2026-07-27","status":"verified-with-boundary","nextReview":"2026-08-27","publicRecord":"/datasets/e-mtab-14406/"},{"id":"prjna1200704","label":"Inchausti et al. 2026","paper":"https://doi.org/10.7554/eLife.105822","repository":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1200704","processed":"https://zenodo.org/records/18760090","lastChecked":"2026-07-27","status":"verified-with-boundary","nextReview":"2026-08-27","publicRecord":"/datasets/prjna1200704/"}],"reviewQueue":[{"id":"GSE174198-AUTHOR-CODE","source":"Reuter et al. 2023","state":"scientific-review","priority":"medium","issue":"The paper states that code is on GitHub, but no repository URL is exposed on the official article pages.","issueZh":"论文说明分析代码位于 GitHub，但官方文章页面没有给出可核验的仓库地址。","safePublicAction":"Keep the code link unavailable and do not present a recomputed PCA as author coordinates.","safePublicActionZh":"代码链接继续标记为不可用，不把重新计算的 PCA 冒充作者坐标。","evidence":[{"label":"Primary paper","url":"https://doi.org/10.1038/s41467-023-43437-2"}]},{"id":"PRJNA1200704-FINAL-OBJECT","source":"Inchausti et al. 2026","state":"scientific-review","priority":"medium","issue":"Final author cell metadata and embedding coordinates are not deposited with the current public release.","issueZh":"当前公开版本没有存放作者最终细胞元数据和降维坐标。","safePublicAction":"Keep the study in the catalogue without fabricating a final interactive atlas.","safePublicActionZh":"保留该研究的目录记录，但不编造最终交互图谱。","evidence":[{"label":"Primary paper","url":"https://doi.org/10.7554/eLife.105822"},{"label":"BioProject","url":"https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1200704"}]},{"id":"PRJEB72370-CANDIDATE-CURATION","source":"Keneskhanova et al. 2025","state":"scientific-review","priority":"high","issue":"A qualifying T. brucei single-cell study using SL-Smart-seq3xpress and public ENA accession PRJEB72370 was identified during the 2026-07-27 discovery audit. Its cell, sample, matrix, licence and annotation boundaries have not yet completed portal curation.","issueZh":"2026-07-27 新研究检索发现了一项符合范围的布氏锥虫单细胞研究，使用 SL-Smart-seq3xpress，公共 ENA 登录号为 PRJEB72370；其细胞、样本、矩阵、许可和注释边界尚未完成本站审核。","safePublicAction":"Expose it only as a candidate evidence item. Do not add it to catalogue totals or atlas layers until scientific curation is complete.","safePublicActionZh":"目前仅作为候选证据公开；完成科学审核前，不计入正式目录总数，也不加入图谱表达层。","evidence":[{"label":"Primary paper","url":"https://doi.org/10.1038/s41586-025-08720-w"},{"label":"ENA PRJEB72370","url":"https://www.ebi.ac.uk/ena/browser/view/PRJEB72370"}]}]}