{
  "schemaVersion": "1.0.0",
  "registryVersion": "2026.07.27.2",
  "releasedAt": "2026-07-27",
  "scope": "Study data and portal-derived files copied into the public TrypCell preview",
  "formalReleaseGate": {
    "status": "blocked-pending-rights-review",
    "blockingRecords": [
      "brg-2021-bsf",
      "how-2022-tsetse",
      "reu-2023-skin",
      "lai-2026-cruzi",
      "portal-derived-indexes"
    ],
    "requirement": "Before a formal institutional mirror is announced, record a standard redistribution grant or convert each blocking mirror to link-only delivery. Assign a licence to portal-curated metadata separately."
  },
  "interpretation": {
    "integrity": "Each aggregate SHA-256 is calculated from sorted public-relative paths and the SHA-256 of each file.",
    "rights": "Public availability, article open access and data-file redistribution rights are separate. This manifest does not replace upstream terms or legal review.",
    "caution": "A warning status is not a licence grant. Files with unverified or non-standard rights require source-term review before reuse or downstream redistribution."
  },
  "records": [
    {
      "id": "brg-2021-bsf",
      "label": "Briggs et al. 2021 author atlas mirror",
      "source": "https://zenodo.org/records/5163554",
      "rightsStatus": "partial-licence-scope-unverified",
      "rightsEvidence": "Zenodo 5163554 records CC BY 4.0 for its deposited files; TrypCell has not yet documented that this grant also covers coordinates and metadata decoded from the separately hosted author H5AD service",
      "portalPolicy": "public-research-display-with-rights-warning",
      "reuseInstruction": "Cite the paper and Zenodo record. Before formal redistribution, obtain file-level licence evidence for the author-atlas-derived coordinates and metadata or convert that layer to link-only access.",
      "formalRedistributionEligible": false,
      "artifactPaths": [
        "data/tbrucei-briggs-2021.json",
        "data/tbrucei-gene-index.json"
      ],
      "integrity": {
        "fileCount": 2,
        "bytes": 3448520,
        "aggregateSha256": "49ff7f8277bf2c7bcf25eb5daa3a81f1a1f05b24e07c372f219cf4549257c08a"
      }
    },
    {
      "id": "how-2022-tsetse",
      "label": "Howick et al. 2022 atlas and expression mirror",
      "source": "https://zenodo.org/records/6047732",
      "rightsStatus": "non-standard-open-identifier",
      "rightsEvidence": "Zenodo metadata uses “other-open”; no standard licence identifier is asserted by TrypCell",
      "portalPolicy": "public-research-display-with-rights-warning",
      "reuseInstruction": "Inspect the current Zenodo terms and contact the rights holder when the intended reuse requires a standard licence grant.",
      "formalRedistributionEligible": false,
      "artifactPaths": [
        "data/tbrucei-howick-2022.json",
        "data/tbrucei-howick-gene-index.json",
        "data/howick-expression",
        "cellbrowser/howick-2022-tsetse",
        "cellbrowser/genes",
        "cellbrowser/downloads"
      ],
      "integrity": {
        "fileCount": 95,
        "bytes": 9578674,
        "aggregateSha256": "db03fd096d0e9c43ca665489bdd7e4a4f61b3659e29a2227b9bb7d4d2b818536"
      }
    },
    {
      "id": "brg-2023-replicative",
      "label": "Briggs et al. 2023 BSF and PCF atlas mirror",
      "source": "https://zenodo.org/records/7508131",
      "rightsStatus": "verified",
      "rightsEvidence": "Zenodo 7508131 records CC BY 4.0",
      "portalPolicy": "bundled-with-source-attribution",
      "reuseInstruction": "Cite the paper and Zenodo record and follow CC BY 4.0 attribution requirements.",
      "formalRedistributionEligible": true,
      "artifactPaths": [
        "data/tbrucei-briggs-2023-bsf.json",
        "data/tbrucei-briggs-2023-pcf.json",
        "data/tbrucei-cellcycle-gene-index.json"
      ],
      "integrity": {
        "fileCount": 3,
        "bytes": 5321586,
        "aggregateSha256": "a722ae064ee6125efc6e05c7d30a5c2ee1a8b00b22cece2b519bcb80da9ca23f"
      }
    },
    {
      "id": "reu-2023-skin",
      "label": "Reuter et al. 2023 source-bounded expression mirror",
      "source": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE174198",
      "rightsStatus": "data-file-licence-not-recorded",
      "rightsEvidence": "The portal audit found no separate data-file licence in the GEO record",
      "portalPolicy": "public-research-display-with-rights-warning",
      "reuseInstruction": "Follow current GEO terms, preserve source authorship and verify rights for redistribution outside this research display.",
      "formalRedistributionEligible": false,
      "artifactPaths": [
        "data/reuter-gse174198-atlas.json",
        "data/reuter-gse174198-gene-index.json",
        "data/reuter-expression"
      ],
      "integrity": {
        "fileCount": 66,
        "bytes": 5421858,
        "aggregateSha256": "b50f52f49776108c25b3445c0624168d47292e7ff7911ce6992a8f19698d2708"
      }
    },
    {
      "id": "lai-2026-cruzi",
      "label": "Laidlaw et al. 2026 author-atlas mirror",
      "source": "https://cellatlas-cxg.mvls.gla.ac.uk/view/Trypanosoma_cruzi_inVitro_cellatlas.h5ad/",
      "rightsStatus": "data-file-licence-not-independently-verified",
      "rightsEvidence": "The article is CC BY 4.0; TrypCell does not transfer that licence to the author-atlas files",
      "portalPolicy": "public-research-display-with-rights-warning",
      "reuseInstruction": "Inspect the author atlas and BioStudies terms before redistributing mirrored coordinates or expression values.",
      "formalRedistributionEligible": false,
      "artifactPaths": [
        "data/tcruzi-laidlaw-2026.json",
        "data/tcruzi-gene-index.json"
      ],
      "integrity": {
        "fileCount": 2,
        "bytes": 7246479,
        "aggregateSha256": "abd7bea27e986f4332dbb1fe6c261372876c56f567017142b2399b6f7b1b6408"
      }
    },
    {
      "id": "portal-derived-indexes",
      "label": "TrypCell cross-study availability and identifier indexes",
      "source": "https://prc-trypcell-atlas.com/standards/",
      "rightsStatus": "portal-metadata-licence-pending",
      "rightsEvidence": "No licence has yet been assigned to portal-curated metadata",
      "portalPolicy": "public-access-without-implied-reuse-licence",
      "reuseInstruction": "Public access does not itself grant redistribution rights; cite source databases and the registry release.",
      "formalRedistributionEligible": false,
      "artifactPaths": [
        "data/cross-study-gene-index.json",
        "data/gene-id-mapping-index.json",
        "data/tcruzi-access-audit.json"
      ],
      "integrity": {
        "fileCount": 3,
        "bytes": 19057715,
        "aggregateSha256": "9e890782d801b7ae652445469f4251bd5d90f479360d5ddfdf28714b37072668"
      }
    }
  ]
}
