Nature Communications 12, 5268
PRJEB41744 · ZENODO 5163554 · AUTHOR CELL×GENE
从ENA文件追溯到10,894个图谱细胞
本页把数据仓库文件、作者过滤计数矩阵、整合H5AD图谱和本站网页转换分开记录。所有细胞数均注明统计口径；不同矩阵的基因行数不会被强行写成相同。
3 BAM + 3 BAI submitted files
5,321 + 3,278 + 2,295 cells
Cells × expression features
COUNTING BOUNDARY
8,599个野生型细胞，加2,295个敲除细胞
10,894是三张作者存档过滤矩阵的合计，不是单一野生型轨迹的细胞数。两次野生型重复合计8,599个细胞；ZC3H20敲除矩阵另含2,295个细胞。
ENA · REPOSITORY FILE LAYER
当前公开的是BAM和BAI，不是FASTQ链接
ENA官方文件报告包含3个样本、3个实验和3个运行。每个运行公开一个提交BAM及其BAI索引；核验时FASTQ与SRA FTP字段为空，因此本站不声称存在ENA FASTQ下载。
WT_01
ERR5713587
SAMEA8565918 · ERX5428965
WT_02
ERR5713588
SAMEA8565919 · ERX5428966
ZC3H20_KO
ERR5713589
SAMEA8565920 · ERX5428967
ZENODO · AUTHOR FILTERED MATRICES
三张矩阵的细胞列数与基因行数逐一记录
FILECELL COLUMNSFEATURE ROWSUNCOMPRESSED
WT_01_counts_data.csv5,3218,98195.94 MB
WT_02_counts_data.csv3,2788,83458.23 MB
ZC3H20_KO_counts_data.csv2,2958,59639.74 MB
ARCHIVEEMBriggs_2021_Tbrucei_BSFdifferenciate_NatComms.zip
SIZE26.96 MB
MD5
11e3f460d4fbc8ac43c7cc1806e4e344The three filtered CSV matrices contain different feature-row counts. They are not described as three identical 9,066-feature matrices.
AUTHOR ATLAS · TRYPCELL CONVERSION
表达值来自作者接口，本站只解码
TrypCell decodes author CELLxGENE responses. Display UMAP and PCA coordinates are rounded to six decimals; no cells are clustered or relabelled by TrypCell.
Unmatched author features are retained under their original identifiers. TrypCell does not guess replacement IDs.
Author-response checksums
umapMd5: b30d214233f9f6d6c9537d580ad6bc4dpcaMd5: afebf8f39633b7c1e3d99040b69455f6metadataMd5: ce79b2bd964f82a05564258f1e26fdd3varMd5: 28ac6ab6a4b4ef0a0b87df1b98776348